SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Choline Lysine 20 mM  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Pf6N2E2_2957 +0.1
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Pf6N2E2_1216 +0.3
  Pf6N2E2_797 +0.0
DNA ligase (EC 6.5.1.2) Pf6N2E2_2332 N.D.
  Pf6N2E2_4650 +0.2
DNA polymerase I (EC 2.7.7.7) Pf6N2E2_4162 -3.3
DNA polymerase II (EC 2.7.7.7) Pf6N2E2_2137 -0.1
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Pf6N2E2_4188 +0.3
  Pf6N2E2_5712 -0.1
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Pf6N2E2_4992 -0.6
  Pf6N2E2_570 +0.2
Endonuclease III (EC 4.2.99.18) Pf6N2E2_5594 -1.4
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Pf6N2E2_5506 -0.9
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Pf6N2E2_4569 +0.1
Ku domain protein Pf6N2E2_798 -0.1
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Pf6N2E2_3137 -0.1
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Pf6N2E2_2772 +0.0

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