SEED Subsystem: Pyrimidine utilization in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Uridine (N)  
⨯
Beta-ureidopropionase (EC 3.5.1.6) BPHYT_RS13320 -5.1
  BPHYT_RS21145 N.D.
  BPHYT_RS32490 -0.1
Dihydropyrimidinase (EC 3.5.2.2) BPHYT_RS13300 -5.4
  BPHYT_RS21105 +0.2
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) BPHYT_RS13310 -3.7
Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway No genes
Possible pyrimidine permease in reductive pathway BPHYT_RS13305 -1.9
Possible ring-opening amidohydrolase RutC in novel pyrimidine catabolism pathway No genes
Predicted amidohydrolase RutB in novel pyrimidine catabolism pathway No genes
Predicted flavin reductase RutF in novel pyrimidine catabolism pathway BPHYT_RS25005 -0.1
Predicted monooxygenase RutA in novel pyrimidine catabolism pathway No genes
Predicted reductase RutE in novel pyrimidine catabolism pathway BPHYT_RS23860 +0.5
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism BPHYT_RS13315 -3.5
Pyrimidine ABC transporter, ATP-binding protein No genes
Pyrimidine ABC transporter, substrate-binding component No genes
Pyrimidine ABC transporter, transmembrane component 1 No genes
Pyrimidine ABC transporter, transmembrane component 2 No genes
Transcriptional regulator RutR of pyrimidine catabolism (TetR family) BPHYT_RS13325 -0.3
Uracil permease No genes

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