SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Fusidic 0.125 mg/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) AO353_00710 N.D.
  AO353_07970 -0.3
DNA polymerase I (EC 2.7.7.7) AO353_10930 -2.3
DNA polymerase II (EC 2.7.7.7) AO353_29350 -0.3
DNA-3-methyladenine glycosylase (EC 3.2.2.20) AO353_02775 -0.2
  AO353_10605 +0.1
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) AO353_03460 -0.7
  AO353_06500 +0.4
  AO353_23245 +0.6
Endonuclease III (EC 4.2.99.18) AO353_04085 -0.4
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) AO353_03720 -2.0
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) AO353_08320 -0.1
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) AO353_04320 -0.2
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 AO353_17560 +0.2

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