SEED Subsystem: DNA Repair Base Excision in Dyella japonica UNC79MFTsu3.2

Experiments:

Role Gene Name D-Cycloserine 0.032 mg/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABZR86_RS02935 -0.0
DNA ligase (EC 6.5.1.2) ABZR86_RS01875 N.D.
DNA polymerase I (EC 2.7.7.7) ABZR86_RS17015 -4.7
  ABZR86_RS22160 -0.1
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABZR86_RS01545 +0.1
  ABZR86_RS15805 -0.0
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABZR86_RS20915 -0.0
Endonuclease III (EC 4.2.99.18) ABZR86_RS08185 -2.7
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) ABZR86_RS01905 -0.2
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABZR86_RS13335 -0.0
Ku domain protein ABZR86_RS02930 +0.1
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABZR86_RS02800 -0.1
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABZR86_RS12580 +0.2

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