SEED Subsystem: Heat shock dnaK gene cluster extended in Dyella japonica UNC79MFTsu3.2

Experiments:

Role Gene Name Fusidic 0.4 mg/ml  
⨯
Chaperone protein DnaJ ABZR86_RS05645 -0.9
Chaperone protein DnaK ABZR86_RS05650 N.D.
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX ABZR86_RS19970 -0.4
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) ABZR86_RS10370 N.D.
Heat shock protein GrpE ABZR86_RS05655 N.D.
Heat-inducible transcription repressor HrcA ABZR86_RS05660 +0.9
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) ABZR86_RS11905 +0.3
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH ABZR86_RS12575 N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB ABZR86_RS11910 -0.3
Ribonuclease PH (EC 2.7.7.56) ABZR86_RS11900 +0.2
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) ABZR86_RS10230 +1.6
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) ABZR86_RS17065 +0.2
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) ABZR86_RS00605 -0.3
Signal peptidase-like protein No genes
Translation elongation factor LepA ABZR86_RS07165 -3.0
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I ABZR86_RS11380 -0.4
tmRNA-binding protein SmpB ABZR86_RS05700 -3.8

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