SEED Subsystem: NAD and NADP cofactor biosynthesis global in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name L-Proline (N)  
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) BPHYT_RS07265 -0.2
ADP-ribose pyrophosphatase (EC 3.6.1.13) BPHYT_RS06700 +0.2
Amidases related to nicotinamidase BPHYT_RS16185 -0.5
  BPHYT_RS20870 +0.0
  BPHYT_RS26090 N.D.
C-terminal domain of CinA type S No genes
C-terminal domain of CinA type S homolog No genes
Glutamine amidotransferase chain of NAD synthetase BPHYT_RS05480 -1.4
Indoleamine 2,3-dioxygenase (EC 1.13.11.52) No genes
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis No genes
Kynureninase (EC 3.7.1.3) BPHYT_RS07275 -0.1
  BPHYT_RS16030 -0.2
Kynurenine 3-monooxygenase (EC 1.14.13.9) No genes
Kynurenine formamidase (EC 3.5.1.9) No genes
Kynurenine formamidase, bacterial (EC 3.5.1.9) BPHYT_RS09685 +0.5
  BPHYT_RS16025 +0.3
Kynurenine formamidase, yeast-type BNA7 (EC 3.5.1.9) No genes
L-Aspartate dehydrogenase (EC 1.4.1.21) No genes
L-aspartate oxidase (EC 1.4.3.16) BPHYT_RS15640 -0.6
N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1) No genes
NAD kinase (EC 2.7.1.23) BPHYT_RS03565 N.D.
NAD pyrophosphatase, periplasmic (EC 3.6.1.22) No genes
NAD synthetase (EC 6.3.1.5) BPHYT_RS05480 -1.4
  BPHYT_RS23720 +0.2
NAD transporter of endosymbionts, possible No genes
NMN 5'-nucleotidase, extracellular (EC 3.1.3.5) No genes
NMN phosphatase (EC 3.1.3.5) No genes
NMN synthetase (EC 6.3.1.-) No genes
NadR transcriptional regulator No genes
Niacin transporter NiaP BPHYT_RS10360 +0.6
  BPHYT_RS23085 -0.2
  BPHYT_RS25130 -0.2
  BPHYT_RS25675 -0.5
Niacin transporter in yeast, DAL5 family No genes
Nicotinamidase (EC 3.5.1.19) No genes
Nicotinamidase family protein YcaC No genes
Nicotinamidase/isochorismatase family protein BPHYT_RS28815 N.D.
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) BPHYT_RS26895 +0.1
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1) No genes
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family No genes
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) No genes
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) No genes
Nicotinate phosphoribosyltransferase (EC 2.4.2.11) BPHYT_RS14535 +0.2
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) BPHYT_RS06395 N.D.
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family No genes
Nicotinate-nucleotide adenylyltransferase, NadM family (EC 2.7.7.18) No genes
Nicotine adenine dinucleotide glycohydrolase (NADGH) (EC 3.2.2.5) No genes
Nudix-related transcriptional regulator NrtR No genes
Predicted N-ribosylNicotinamide CRP-like regulator No genes
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) BPHYT_RS15645 -0.7
Quinolinate synthetase (EC 2.5.1.72) BPHYT_RS15650 -1.0
Ribosyl nicotinamide transporter, PnuC-like No genes
Ribosylnicotinamide kinase (EC 2.7.1.22) No genes
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22) No genes
Substrate-specific component NiaX of predicted niacin ECF transporter No genes
Transcriptional repressor for NAD biosynthesis in gram-positives No genes
Tryptophan 2,3-dioxygenase (EC 1.13.11.11) BPHYT_RS16035 N.D.

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