SEED Subsystem: Lysine Biosynthesis DAP Pathway in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name L-Asparagine (N)  
⨯
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) No genes
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) BPHYT_RS12190 N.D.
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) BPHYT_RS33895 N.D.
Aspartokinase (EC 2.7.2.4) BPHYT_RS12410 N.D.
Diaminopimelate decarboxylase (EC 4.1.1.20) BPHYT_RS00645 -0.1
  BPHYT_RS17930 +0.1
  BPHYT_RS35090 +0.3
Diaminopimelate epimerase (EC 5.1.1.7) BPHYT_RS01665 N.D.
Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) No genes
Dihydrodipicolinate reductase (EC 1.3.1.26) No genes
Dihydrodipicolinate synthase (EC 4.2.1.52) No genes
L,L-diaminopimelate aminotransferase (EC 2.6.1.83) No genes
LL-diaminopimelate aminotransferase, predicted alternative No genes
Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16) No genes
N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) No genes
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) BPHYT_RS27410 +0.6
N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) No genes
N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) BPHYT_RS12185 -1.4
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) BPHYT_RS12200 N.D.

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