SEED Subsystem: Polyhydroxybutyrate metabolism in Dyella japonica UNC79MFTsu3.2

Experiments:

Role Gene Name Sisomicin 0.016 mg/ml  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) ABZR86_RS05470 -0.3
  ABZR86_RS07195 -1.1
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) No genes
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) ABZR86_RS07195 -1.1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) No genes
Acetoacetyl-CoA reductase (EC 1.1.1.36) ABZR86_RS00570 -2.9
  ABZR86_RS06405 +0.1
Acetoacetyl-CoA synthetase (EC 6.2.1.16) No genes
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) ABZR86_RS08570 +0.1
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) ABZR86_RS15585 +0.0
D-beta-hydroxybutyrate permease ABZR86_RS08595 +0.2
Enoyl-CoA hydratase (EC 4.2.1.17) ABZR86_RS00870 N.D.
  ABZR86_RS00890 -0.1
  ABZR86_RS05470 -0.3
  ABZR86_RS07195 -1.1
Intracellular PHB depolymerase (EC 3.1.1.-) ABZR86_RS19210 +0.4
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase ABZR86_RS05995 -2.3
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter ABZR86_RS11680 -0.0
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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