SEED Subsystem: DNA-replication in Dyella japonica UNC79MFTsu3.2

Experiments:

Role Gene Name Cisplatin 0.0032 mg/ml  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) ABZR86_RS11840 -4.0
ATP-dependent DNA helicase RecQ ABZR86_RS19925 -1.5
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA ABZR86_RS15135 N.D.
  ABZR86_RS19885 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) ABZR86_RS10845 N.D.
DNA polymerase I (EC 2.7.7.7) ABZR86_RS17015 -0.7
  ABZR86_RS22160 -0.0
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) ABZR86_RS18200 -0.7
  ABZR86_RS21665 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) ABZR86_RS15140 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) ABZR86_RS19100 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) ABZR86_RS06135 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) ABZR86_RS09100 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) ABZR86_RS07270 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) ABZR86_RS06245 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) ABZR86_RS12830 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN ABZR86_RS05665 -3.1
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) ABZR86_RS07670 N.D.
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) ABZR86_RS07665 -5.2
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) ABZR86_RS07660 -3.1
Helicase PriA essential for oriC/DnaA-independent DNA replication ABZR86_RS12535 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA ABZR86_RS10840 -5.0
Holliday junction DNA helicase RuvB ABZR86_RS10830 -4.0
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein ABZR86_RS00660 -7.1
Recombination protein RecR ABZR86_RS06235 -7.1
Replicative DNA helicase (EC 3.6.1.-) ABZR86_RS08855 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABZR86_RS02800 -1.3
Transcription-repair coupling factor ABZR86_RS21210 -2.4

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