SEED Subsystem: tRNA processing in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name nitrate 100 mM  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) Pf1N1B4_569 +0.1
Ribonuclease D (EC 3.1.26.3) Pf1N1B4_3345 +1.4
Ribonuclease P protein component (EC 3.1.26.5) Pf1N1B4_1931 N.D.
Ribonuclease PH (EC 2.7.7.56) Pf1N1B4_2117 +1.3
Ribonuclease T (EC 3.1.13.-) Pf1N1B4_745 N.D.
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) Pf1N1B4_3111 +0.7
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) Pf1N1B4_3158 +1.0
  Pf1N1B4_7 +0.8
tRNA pseudouridine synthase B (EC 4.2.1.70) Pf1N1B4_1159 -0.7
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase Pf1N1B4_2712 +0.3
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) Pf1N1B4_827 N.D.
tRNAHis-5'-guanylyltransferase No genes

Or select organism:

Or view this subsystem at the SEED (slow)