SEED Subsystem: Heme and Siroheme Biosynthesis in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name nitrate 100 mM  
5-aminolevulinate synthase (EC 2.3.1.37) No genes
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) Pf1N1B4_1907 N.D.
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Pf1N1B4_3868 -0.1
  Pf1N1B4_5783 -0.1
  Pf1N1B4_5784 N.D.
  Pf1N1B4_5785 N.D.
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative No genes
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative 2 No genes
Distant homolog of E. coli HemX protein in Xanthomonadaceae No genes
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Pf1N1B4_2932 N.D.
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) Pf1N1B4_2716 N.D.
Glutamyl-tRNA reductase (EC 1.2.1.70) Pf1N1B4_2918 N.D.
Glutamyl-tRNA synthetase (EC 6.1.1.17) No genes
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase No genes
Hemoprotein HemQ, essential component of heme biosynthetic pathway in Gram-positive bacteria No genes
Hypothetical membrane protein, possible involvement in cytochrome functioning/assembly No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
Porphobilinogen deaminase (EC 2.5.1.61) Pf1N1B4_2185 N.D.
Porphobilinogen synthase (EC 4.2.1.24) Pf1N1B4_2207 +0.4
  Pf1N1B4_92 +0.5
Precorrin-2 oxidase (EC 1.3.1.76) Pf1N1B4_4065 -0.1
Protoporphyrinogen IX oxidase, aerobic (EC 1.3.3.4) No genes
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) No genes
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB Pf1N1B4_2334 +0.3
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake No genes
Sirohydrochlorin ferrochelatase (EC 4.99.1.4) Pf1N1B4_4065 -0.1
Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Pf1N1B4_1532 N.D.
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Pf1N1B4_3834 +1.5
  Pf1N1B4_4065 -0.1
  Pf1N1B4_5773 N.D.
Uroporphyrinogen-III synthase (EC 4.2.1.75) Pf1N1B4_2186 N.D.
  Pf1N1B4_2187 N.D.
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75) No genes
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75) No genes

Or select organism:

Or view this subsystem at the SEED (slow)