SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name Carbenicillin 2 mg/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Pf1N1B4_3180 +0.0
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Pf1N1B4_4314 -0.0
DNA ligase (EC 6.5.1.2) Pf1N1B4_2394 -0.4
  Pf1N1B4_3857 N.D.
DNA polymerase I (EC 2.7.7.7) Pf1N1B4_1875 N.D.
DNA polymerase II (EC 2.7.7.7) Pf1N1B4_87 -0.1
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Pf1N1B4_1918 N.D.
  Pf1N1B4_3492 -0.2
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Pf1N1B4_2687 +0.0
  Pf1N1B4_4569 +0.0
  Pf1N1B4_612 +0.3
Endonuclease III (EC 4.2.99.18) Pf1N1B4_739 -0.6
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Pf1N1B4_668 -1.2
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Pf1N1B4_2309 -0.3
Ku domain protein Pf1N1B4_4751 -0.2
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Pf1N1B4_3020 -0.2
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Pf1N1B4_3309 -0.3

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