SEED Subsystem: D-ribose utilization in Ralstonia sp. UNC404CL21Col

Experiments:

Role Gene Name no_plant_rhizosphere sample 3; outgrowth in LB  
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Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Predicted regulator of ribose utilization, LacI family No genes
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) No genes
Ribokinase (EC 2.7.1.15) ABZR87_RS09950 -1.3
Ribose 5-phosphate isomerase A (EC 5.3.1.6) ABZR87_RS11005 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) ABZR87_RS09965 +1.0
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) No genes
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) ABZR87_RS09970 +1.6
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) ABZR87_RS09960 +2.3
  ABZR87_RS12030 +0.2
Ribose operon repressor ABZR87_RS09955 -1.8
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17) No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1 No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2 No genes

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