SEED Subsystem: Oxidative stress in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name 5-Hydroxymethylfurfural 2.5 mM  
⨯
Alkyl hydroperoxide reductase subunit C-like protein Pf1N1B4_2246 +0.1
  Pf1N1B4_4093 N.D.
  Pf1N1B4_746 N.D.
Catalase (EC 1.11.1.6) Pf1N1B4_2609 -0.6
  Pf1N1B4_2766 -0.1
  Pf1N1B4_3732 -0.1
  Pf1N1B4_3978 -0.1
  Pf1N1B4_4230 +0.2
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins Pf1N1B4_4701 N.D.
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR Pf1N1B4_1179 N.D.
Ferroxidase (EC 1.16.3.1) No genes
Fumarate and nitrate reduction regulatory protein Pf1N1B4_3867 N.D.
Heme oxygenase HemO, associated with heme uptake Pf1N1B4_608 -0.2
Hydrogen peroxide-inducible genes activator Pf1N1B4_1211 -0.0
  Pf1N1B4_1672 -0.1
  Pf1N1B4_2106 -1.5
Iron-binding ferritin-like antioxidant protein No genes
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) Pf1N1B4_1086 +0.1
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO Pf1N1B4_5754 N.D.
  Pf1N1B4_5755 N.D.
Non-specific DNA-binding protein Dps No genes
Organic hydroperoxide resistance protein Pf1N1B4_276 +0.3
  Pf1N1B4_5980 N.D.
Organic hydroperoxide resistance transcriptional regulator Pf1N1B4_258 +0.2
  Pf1N1B4_275 -0.2
  Pf1N1B4_5981 N.D.
Paraquat-inducible protein A Pf1N1B4_2884 -0.4
  Pf1N1B4_2885 -0.8
  Pf1N1B4_4822 +0.0
  Pf1N1B4_4823 -0.1
Paraquat-inducible protein B Pf1N1B4_2886 -0.6
  Pf1N1B4_4821 N.D.
Peroxidase (EC 1.11.1.7) Pf1N1B4_4230 +0.2
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) Pf1N1B4_711 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR Pf1N1B4_1871 -1.4
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family Pf1N1B4_1722 +0.1
  Pf1N1B4_4177 +0.6
transcriptional regulator, Fur family No genes

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