SEED Subsystem: Ammonia assimilation in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name nitrate (N); low aeration  
⨯
Ammonium transporter HSERO_RS00425 -1.4
  HSERO_RS02900 -0.2
Ammonium transporter family No genes
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1) HSERO_RS18025 -0.3
Global nitrogen regulatory protein, CRP family of transcriptional regulators No genes
Glutamate synthase [NADPH] large chain (EC 1.4.1.13) HSERO_RS16215 -0.0
  HSERO_RS19595 -5.0
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13) No genes
Glutamate synthase [NADPH] small chain (EC 1.4.1.13) HSERO_RS19590 -2.1
Glutamate synthase, alpha subunit domain protein No genes
Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) HSERO_RS07140 -0.8
Glutamine amidotransferase protein GlxB (EC 2.4.2.-) No genes
Glutamine amidotransferase, class-II HSERO_RS24040 -0.6
Glutamine synthetase inactivating factor IF17 No genes
Glutamine synthetase inactivating factor IF7 No genes
Glutamine synthetase type I (EC 6.3.1.2) HSERO_RS15690 N.D.
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) No genes
Glutamine synthetase type III, GlnN (EC 6.3.1.2) No genes
Glutamine synthetase, clostridia type (EC 6.3.1.2) No genes
Nitrogen regulation protein NR(I) HSERO_RS06700 +0.2
  HSERO_RS09475 -0.1
  HSERO_RS15680 -7.3
  HSERO_RS16810 +0.0
  HSERO_RS22535 -0.2
Nitrogen regulation protein NR(II) (EC 2.7.3.-) No genes
Nitrogen regulatory protein P-II HSERO_RS00420 N.D.
  HSERO_RS09460 N.D.
Nitrogen regulatory protein P-II, glnK No genes
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2) No genes
[Protein-PII] uridylyltransferase (EC 2.7.7.59) HSERO_RS10865 -6.0
ammonium/methylammonium permease No genes

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