SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name Chlorate 75 mM  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) Psest_1179 +0.8
  Psest_1322 -2.6
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Psest_0181 -2.4
Catalase (EC 1.11.1.6) Psest_2741 -0.3
  Psest_2785 N.D.
  Psest_3578 -1.2
  Psest_4254 +0.5
  Psest_4313 +0.3
  Psest_0775 +0.5
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) No genes
Glycine cleavage system H protein Psest_0182 +0.4
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Psest_0183 -0.0
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE Psest_3840 -0.0
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF Psest_3839 +0.7
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Psest_3841 +0.2
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) Psest_1181 -0.4
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) Psest_0354 +0.1
  Psest_3837 +0.5
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) Psest_3651 -1.5
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) Psest_3404 N.D.
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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