SEED Subsystem: Ubiquinone Biosynthesis in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1  
⨯
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) BPHYT_RS17435 N.D.
2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-) BPHYT_RS16580 N.D.
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) BPHYT_RS14940 N.D.
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) BPHYT_RS00385 +0.1
  BPHYT_RS10845 -0.2
  BPHYT_RS15415 -0.3
  BPHYT_RS35345 +0.3
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) BPHYT_RS00380 -0.2
  BPHYT_RS10840 N.D.
  BPHYT_RS17530 -0.0
  BPHYT_RS35340 -1.0
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.-) No genes
Chorismate--pyruvate lyase (EC 4.1.3.40) BPHYT_RS06005 +0.1
NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) No genes
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes BPHYT_RS03175 -3.9
Ubiquinone biosynthesis enzyme COQ7 No genes
Ubiquinone biosynthesis monooxygenase UbiB BPHYT_RS03180 N.D.
  BPHYT_RS23735 +0.1
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) No genes

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