SEED Subsystem: Pyruvate Alanine Serine Interconversions in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1  
⨯
Alanine dehydrogenase (EC 1.4.1.1) BPHYT_RS25440 -1.3
  BPHYT_RS35420 +0.1
Alanine racemase (EC 5.1.1.1) BPHYT_RS12240 N.D.
Alanine racemase, biosynthetic (EC 5.1.1.1) No genes
Alanine racemase, catabolic (EC 5.1.1.1) No genes
Branched-chain amino acid aminotransferase (EC 2.6.1.42) BPHYT_RS16285 +0.2
D-alanine aminotransferase (EC 2.6.1.21) BPHYT_RS02420 -0.0
D-amino acid dehydrogenase small subunit (EC 1.4.99.1) BPHYT_RS09510 +0.3
  BPHYT_RS10270 -1.1
  BPHYT_RS14790 -0.9
  BPHYT_RS17845 +0.0
  BPHYT_RS18505 -2.7
  BPHYT_RS21010 N.D.
  BPHYT_RS22250 -0.7
  BPHYT_RS26530 +0.2
  BPHYT_RS31410 -0.5
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine/D-alanine/glycine transporter No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
L-serine dehydratase (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) BPHYT_RS19340 -0.1
  BPHYT_RS25100 -1.3
L-serine dehydratase, beta subunit (EC 4.3.1.17) BPHYT_RS19340 -0.1
  BPHYT_RS25100 -1.3
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) BPHYT_RS21095 -0.4
  BPHYT_RS21555 -0.2
  BPHYT_RS23155 +0.2
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG No genes
Serine transporter No genes
Valine--pyruvate aminotransferase (EC 2.6.1.66) BPHYT_RS05965 +0.8

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Or view this subsystem at the SEED (slow)