SEED Subsystem: D-ribose utilization in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1  
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Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Predicted regulator of ribose utilization, LacI family No genes
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) No genes
Ribokinase (EC 2.7.1.15) BPHYT_RS20695 +1.1
  BPHYT_RS25805 +0.4
Ribose 5-phosphate isomerase A (EC 5.3.1.6) BPHYT_RS08465 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) BPHYT_RS01820 -0.2
  BPHYT_RS04685 +0.1
  BPHYT_RS11215 +0.5
  BPHYT_RS20685 -0.3
  BPHYT_RS20815 -0.2
  BPHYT_RS25790 N.D.
  BPHYT_RS34245 +3.1
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) No genes
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) BPHYT_RS11220 -0.4
  BPHYT_RS20560 -0.4
  BPHYT_RS20680 -0.3
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) BPHYT_RS01810 +0.3
  BPHYT_RS04690 +0.4
  BPHYT_RS11210 -0.6
  BPHYT_RS16055 -0.9
  BPHYT_RS20690 +0.5
  BPHYT_RS20810 +0.6
  BPHYT_RS20820 N.D.
  BPHYT_RS21035 +0.3
  BPHYT_RS25785 +0.5
  BPHYT_RS25800 +0.2
  BPHYT_RS26045 +0.3
  BPHYT_RS26050 +0.3
  BPHYT_RS27190 -0.8
  BPHYT_RS34240 +1.2
Ribose operon repressor BPHYT_RS11205 +0.1
  BPHYT_RS22755 -0.8
  BPHYT_RS27985 -0.0
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17) No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1 No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2 No genes

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