SEED Subsystem: Bacterial Chemotaxis in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10  
⨯
Aerotaxis sensor receptor protein BPHYT_RS34360 -0.1
Chemotaxis protein CheC -- inhibitor of MCP methylation BPHYT_RS34765 +0.1
  BPHYT_RS34770 -0.1
Chemotaxis protein CheD BPHYT_RS18975 -0.6
Chemotaxis protein CheV (EC 2.7.3.-) BPHYT_RS07045 +0.4
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) BPHYT_RS18980 +0.1
  BPHYT_RS19800 +0.1
  BPHYT_RS26320 +0.7
  BPHYT_RS26780 -0.0
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY BPHYT_RS12845 -5.7
  BPHYT_RS18965 -0.8
  BPHYT_RS19005 -0.4
  BPHYT_RS24295 N.D.
  BPHYT_RS26770 +0.0
  BPHYT_RS34550 N.D.
  BPHYT_RS35960 +0.4
Chemotaxis response - phosphatase CheZ BPHYT_RS18960 -1.9
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) BPHYT_RS18970 -3.5
  BPHYT_RS19785 +0.8
  BPHYT_RS26775 -1.0
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) BPHYT_RS02265 -0.2
  BPHYT_RS18690 -0.1
  BPHYT_RS18695 +0.1
Flagellar motor switch protein FliG BPHYT_RS18780 -0.4
Flagellar motor switch protein FliM BPHYT_RS18810 -0.5
Flagellar motor switch protein FliN BPHYT_RS18815 N.D.
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE No genes
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) BPHYT_RS01025 N.D.
  BPHYT_RS01970 +0.2
  BPHYT_RS01990 -0.2
  BPHYT_RS02705 -0.2
  BPHYT_RS03025 +0.2
  BPHYT_RS04395 -0.6
  BPHYT_RS11130 +0.2
  BPHYT_RS11200 +0.3
  BPHYT_RS13460 +0.0
  BPHYT_RS13820 -0.1
  BPHYT_RS18990 -0.5
  BPHYT_RS19810 +0.2
  BPHYT_RS20485 -0.2
  BPHYT_RS22110 -0.2
  BPHYT_RS29755 +0.1
  BPHYT_RS31390 +0.0
  BPHYT_RS31400 -1.9
  BPHYT_RS31790 -0.3
  BPHYT_RS32250 -0.1
  BPHYT_RS32885 +0.7
  BPHYT_RS33500 +0.2
  BPHYT_RS34130 -0.1
  BPHYT_RS34190 -0.0
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) BPHYT_RS18995 +0.8
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) BPHYT_RS01825 +0.9
  BPHYT_RS04695 -0.4
  BPHYT_RS20805 +0.5
  BPHYT_RS27195 -0.1
  BPHYT_RS34250 +1.5
Signal transduction histidine kinase CheA (EC 2.7.3.-) BPHYT_RS08330 -0.1
  BPHYT_RS12005 +0.2
  BPHYT_RS19000 -0.4
  BPHYT_RS34565 +0.2
  BPHYT_RS34570 -0.0

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