SEED Subsystem: DNA Repair Base Excision in Enterobacter sp. TBS_079

Role	Gene	Name	Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
ATP-dependent DNA ligase (EC 6.5.1.1)	No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC	No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD	No genes
DNA ligase (EC 6.5.1.2)	MPMX20_03305		N.D.
DNA polymerase I (EC 2.7.7.7)	MPMX20_03668		+0.0
	MPMX20_04601		-0.7
DNA polymerase II (EC 2.7.7.7)	MPMX20_00754		-0.2
DNA-3-methyladenine glycosylase (EC 3.2.2.20)	MPMX20_00185		+0.2
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	MPMX20_03050		-0.2
Endonuclease III (EC 4.2.99.18)	MPMX20_02005		+0.2
Endonuclease VIII	MPMX20_01348		+0.2
Exodeoxyribonuclease I (EC 3.1.11.1)	MPMX20_02997		-2.3
Flap structure-specific endonuclease (EC 3.-.-.-)	No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	MPMX20_00100		+0.2
Ku domain protein	No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	MPMX20_03751		-2.6
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog	No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog	No genes
Uracil-DNA glycosylase, family 1	MPMX20_03449		-0.3