SEED Subsystem: Calvin-Benson cycle in Rhodopseudomonas palustris CGA009

Experiments:

Role Gene Name PM with succinate and Sodium Formate aerobic in dark  
⨯
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) TX73_012945 +2.3
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) TX73_024120 N.D.
Fructose-1,6-bisphosphatase, type V, archaeal (EC 3.1.3.11) No genes
Fructose-bisphosphate aldolase class I (EC 4.1.2.13) TX73_004845 +1.3
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) TX73_024105 N.D.
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) TX73_004865 N.D.
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) TX73_004865 N.D.
Phosphoglycerate kinase (EC 2.7.2.3) TX73_004860 N.D.
Phosphoribulokinase (EC 2.7.1.19) TX73_024115 N.D.
Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown No genes
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex No genes
Ribose 1,5-bisphosphate or 5-ribose-1,2-cyclic phosphate dehydrogenase No genes
Ribose 5-phosphate isomerase A (EC 5.3.1.6) TX73_010210 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribulose bisphosphate carboxylase (EC 4.1.1.39) TX73_024100 +0.1
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) TX73_008010 -0.2
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) TX73_008015 -0.5
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) TX73_019755 N.D.
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37) No genes
Transketolase (EC 2.2.1.1) TX73_004870 -0.1
  TX73_024110 -2.7
Transketolase, C-terminal section (EC 2.2.1.1) No genes
Transketolase, N-terminal section (EC 2.2.1.1) No genes
Triosephosphate isomerase (EC 5.3.1.1) TX73_014970 N.D.

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