SEED Subsystem: Nitrogen fixation in Rhodopseudomonas palustris CGA009

Experiments:

Role Gene Name NFM_No_Mo_Plus_VCl3 with acetate trihydrate  
⨯
4Fe-4S ferredoxin, nitrogenase-associated TX73_023955 -0.0
  TX73_024040 -0.2
  TX73_024050 -3.3
AnfO protein, required for Mo- and V-independent nitrogenase TX73_007365 -0.5
AnfR protein, required for Mo- and V-independent nitrogenase TX73_007360 +0.1
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily TX73_023935 -0.4
Homocitrate synthase (EC 2.3.3.14) TX73_023930 -3.6
Homocitrate synthase alpha subunit (EC 2.3.3.14) No genes
Homocitrate synthase omega subunit (EC 2.3.3.14) No genes
Iron-sulfur cluster assembly scaffold protein NifU TX73_023940 +0.1
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis TX73_024025 -0.1
NifB-domain protein, type 2 TX73_012175 +0.3
NifM protein No genes
NifT protein TX73_024010 +0.1
NifX-associated protein TX73_023965 -0.8
NifY protein No genes
NifZ protein TX73_024015 -0.4
  TX73_024020 -0.5
Nitrogenase (iron-iron) alpha chain (EC 1.18.6.1) TX73_007380 -0.0
Nitrogenase (iron-iron) beta chain (EC 1.18.6.1) TX73_007370 -0.2
Nitrogenase (iron-iron) delta chain (EC 1.18.6.1) TX73_007375 -0.3
Nitrogenase (iron-iron) reductase and maturation protein AnfH TX73_007385 +0.1
Nitrogenase (iron-iron) transcriptional regulator TX73_007390 -0.0
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) TX73_013650 +0.0
  TX73_023990 -2.4
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) TX73_023985 -2.1
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH TX73_023995 -4.0
Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA TX73_024055 -3.9
Nitrogenase (vanadium-iron) alpha chain (EC 1.18.6.1) TX73_007075 -0.8
Nitrogenase (vanadium-iron) beta chain (EC 1.18.6.1) TX73_007085 -0.9
Nitrogenase (vanadium-iron) delta chain (EC 1.18.6.1) TX73_007080 -0.7
Nitrogenase (vanadium-iron) reductase and maturation protein VnfH TX73_007065 -0.4
Nitrogenase (vanadium-iron) transcriptional regulator VnfA TX73_007055 -1.6
Nitrogenase FeMo-cofactor carrier protein NifX TX73_023970 -1.4
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE TX73_023980 -1.3
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN TX73_023975 -1.5
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB TX73_012170 +0.1
  TX73_013640 +0.0
  TX73_024045 -3.6
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ TX73_023950 -0.6
Nitrogenase cofactor carrier protein NafY No genes
Nitrogenase stabilizing/protective protein NifW TX73_023925 -0.4
Nitrogenase vanadium-cofactor synthesis protein VnfE TX73_007050 -1.0
  TX73_012140 -0.1
  TX73_012215 +0.1
Nitrogenase vanadium-cofactor synthesis protein VnfN TX73_007045 -0.9
Nitrogenase vanadium-cofactor synthesis protein VnfX TX73_007040 -0.8
Nitrogenase vanadium-cofactor synthesis protein VnfY TX73_007095 -1.2
Nitrogenase-associated protein NifO TX73_005145 +0.3
Transcriptional repressor of nif and glnA operons No genes
probable iron binding protein from the HesB_IscA_SufA family in Nif operon TX73_023945 -0.1
  TX73_024035 +0.3

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