SEED Subsystem: Oxidative stress in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name L-Lysine (C)  
⨯
Alkyl hydroperoxide reductase subunit C-like protein AO356_13095 +0.4
  AO356_18305 +0.1
  AO356_26565 +0.3
Catalase (EC 1.11.1.6) AO356_01620 -0.3
  AO356_07735 -0.2
  AO356_11505 -0.0
  AO356_14775 -0.1
  AO356_15670 -0.0
  AO356_19290 +0.1
  AO356_30175 +0.1
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins AO356_26060 -0.6
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR AO356_07515 N.D.
Ferroxidase (EC 1.16.3.1) AO356_17990 -0.2
Fumarate and nitrate reduction regulatory protein AO356_02485 +0.8
Heme oxygenase HemO, associated with heme uptake AO356_05245 -0.5
Hydrogen peroxide-inducible genes activator AO356_07825 -0.2
  AO356_10095 -0.6
  AO356_12385 +1.2
  AO356_30245 -0.3
Iron-binding ferritin-like antioxidant protein AO356_17990 -0.2
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) AO356_07065 -0.0
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO AO356_25125 +0.1
Non-specific DNA-binding protein Dps AO356_17990 -0.2
Organic hydroperoxide resistance protein AO356_03150 N.D.
  AO356_11555 N.D.
Organic hydroperoxide resistance transcriptional regulator AO356_03075 +0.4
  AO356_03145 N.D.
Paraquat-inducible protein A AO356_01335 -0.2
  AO356_01340 -0.4
  AO356_16225 -0.1
  AO356_16230 +0.1
Paraquat-inducible protein B AO356_01345 +0.1
  AO356_16235 +0.0
Peroxidase (EC 1.11.1.7) AO356_07735 -0.2
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) AO356_09865 +1.0
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR AO356_20930 -0.7
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) AO356_05005 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR AO356_11485 N.D.
bacteriophytochrome heme oxygenase BphO AO356_09860 +0.3
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family AO356_04365 N.D.
  AO356_10645 -0.2
  AO356_23940 -0.4
transcriptional regulator, Fur family No genes

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