SEED Subsystem: Calvin-Benson cycle in Rahnella sp. WP5

Experiments:

Role Gene Name D,L-Lactate (C)  
⨯
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) EX31_RS14275 +0.2
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) EX31_RS08670 -4.1
Fructose-1,6-bisphosphatase, type V, archaeal (EC 3.1.3.11) No genes
Fructose-bisphosphate aldolase class I (EC 4.1.2.13) EX31_RS01425 -0.2
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) EX31_RS21415 N.D.
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) EX31_RS06280 N.D.
  EX31_RS06915 -0.5
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) No genes
Phosphoglycerate kinase (EC 2.7.2.3) EX31_RS21410 N.D.
Phosphoribulokinase (EC 2.7.1.19) No genes
Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown EX31_RS04610 +0.4
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex No genes
Ribose 1,5-bisphosphate or 5-ribose-1,2-cyclic phosphate dehydrogenase No genes
Ribose 5-phosphate isomerase A (EC 5.3.1.6) EX31_RS21465 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) EX31_RS04705 N.D.
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37) No genes
Transketolase (EC 2.2.1.1) EX31_RS20285 -0.2
  EX31_RS21400 -1.4
Transketolase, C-terminal section (EC 2.2.1.1) EX31_RS19490 +0.2
Transketolase, N-terminal section (EC 2.2.1.1) EX31_RS19495 +0.2
Triosephosphate isomerase (EC 5.3.1.1) EX31_RS14300 N.D.

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