SEED Subsystem: Bacterial Chemotaxis in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name inner cut, LB soft agar motility assay  
⨯
Aerotaxis sensor receptor protein BPHYT_RS34360 -1.9
Chemotaxis protein CheC -- inhibitor of MCP methylation BPHYT_RS34765 +0.0
  BPHYT_RS34770 +0.2
Chemotaxis protein CheD BPHYT_RS18975 -0.8
Chemotaxis protein CheV (EC 2.7.3.-) BPHYT_RS07045 +0.2
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) BPHYT_RS18980 -1.2
  BPHYT_RS19800 -0.1
  BPHYT_RS26320 +0.3
  BPHYT_RS26780 +0.4
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY BPHYT_RS12845 -1.6
  BPHYT_RS18965 -2.1
  BPHYT_RS19005 -0.1
  BPHYT_RS24295 N.D.
  BPHYT_RS26770 -0.0
  BPHYT_RS34550 N.D.
  BPHYT_RS35960 +0.3
Chemotaxis response - phosphatase CheZ BPHYT_RS18960 -0.7
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) BPHYT_RS18970 -3.5
  BPHYT_RS19785 +0.2
  BPHYT_RS26775 +0.5
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) BPHYT_RS02265 +0.1
  BPHYT_RS18690 +0.2
  BPHYT_RS18695 +0.2
Flagellar motor switch protein FliG BPHYT_RS18780 -1.4
Flagellar motor switch protein FliM BPHYT_RS18810 -2.3
Flagellar motor switch protein FliN BPHYT_RS18815 N.D.
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE No genes
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) BPHYT_RS01025 N.D.
  BPHYT_RS01970 -0.2
  BPHYT_RS01990 -0.3
  BPHYT_RS02705 -0.1
  BPHYT_RS03025 -0.3
  BPHYT_RS04395 -0.5
  BPHYT_RS11130 -0.0
  BPHYT_RS11200 +0.0
  BPHYT_RS13460 -0.2
  BPHYT_RS13820 +0.0
  BPHYT_RS18990 -0.7
  BPHYT_RS19810 -0.1
  BPHYT_RS20485 +0.0
  BPHYT_RS22110 -0.0
  BPHYT_RS29755 +0.1
  BPHYT_RS31390 -0.2
  BPHYT_RS31400 +0.1
  BPHYT_RS31790 +0.0
  BPHYT_RS32250 +0.1
  BPHYT_RS32885 +0.3
  BPHYT_RS33500 -0.0
  BPHYT_RS34130 -0.1
  BPHYT_RS34190 -0.2
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) BPHYT_RS18995 -2.0
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) BPHYT_RS01825 -0.1
  BPHYT_RS04695 -0.3
  BPHYT_RS20805 -0.4
  BPHYT_RS27195 +0.4
  BPHYT_RS34250 +0.1
Signal transduction histidine kinase CheA (EC 2.7.3.-) BPHYT_RS08330 -0.0
  BPHYT_RS12005 +0.0
  BPHYT_RS19000 -1.8
  BPHYT_RS34565 -0.7
  BPHYT_RS34570 +0.1

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