SEED Subsystem: Photorespiration (oxidative C2 cycle) in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name L-Serine (N)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) RR42_RS16835 +0.2
  RR42_RS19860 +0.6
  RR42_RS23235 N.D.
  RR42_RS26945 -0.1
  RR42_RS31100 +0.1
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) RR42_RS20060 -1.4
Catalase (EC 1.11.1.6) RR42_RS16550 -0.1
  RR42_RS17380 -0.2
  RR42_RS26270 -0.1
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) RR42_RS17285 N.D.
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) RR42_RS34380 -0.0
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) RR42_RS23230 +0.6
Glycine cleavage system H protein RR42_RS20065 +0.8
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) RR42_RS20070 -1.3
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE RR42_RS17310 +0.3
  RR42_RS29880 +0.0
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF RR42_RS17315 -0.1
  RR42_RS29875 +0.1
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD RR42_RS17300 -0.3
  RR42_RS29885 -0.1
  RR42_RS30390 -0.1
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) RR42_RS19850 -0.0
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) RR42_RS12175 -0.1
Malate synthase G (EC 2.3.3.9) No genes
Malyl-CoA lyase (EC 4.1.3.24) RR42_RS24325 -0.1
Phosphoglycolate phosphatase (EC 3.1.3.18) RR42_RS18290 +0.0
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) RR42_RS15485 N.D.
Serine--glyoxylate aminotransferase (EC 2.6.1.45) RR42_RS30400 +0.0

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