SEED Subsystem: Folate Biosynthesis in Rahnella sp. WP5

Experiments:

Role Gene Name D-Xylose (C)  
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) EX31_RS03265 N.D.
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) EX31_RS21480 -0.1
5-nucleotidase SurE (EC 3.1.3.5) EX31_RS07840 -0.0
6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12) No genes
ATPase component of general energizing module of ECF transporters No genes
Alternative Folylglutamate Synthase No genes
Alternative dihydrofolate reductase 2 No genes
Alternative dihydrofolate reductase 3 No genes
Aminodeoxychorismate lyase (EC 4.1.3.38) EX31_RS24450 -0.5
COG0488: ATPase components of ABC transporters with duplicated ATPase domains EX31_RS18075 -0.1
Dihydrofolate reductase (EC 1.5.1.3) EX31_RS03795 N.D.
Dihydrofolate synthase (EC 6.3.2.12) No genes
Dihydroneopterin aldolase (EC 4.1.2.25) EX31_RS08170 N.D.
Dihydroneopterin triphosphate epimerase No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 EX31_RS11690 -0.7
Dihydropteroate synthase (EC 2.5.1.15) EX31_RS08575 N.D.
FolM Alternative dihydrofolate reductase 1 No genes
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB) No genes
Folate transporter 3 No genes
Folylpolyglutamate synthase (EC 6.3.2.17) No genes
Formate--tetrahydrofolate ligase (EC 6.3.4.3) No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 EX31_RS18700 N.D.
GTP cyclohydrolase I (EC 3.5.4.16) type 2 No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9) EX31_RS15980 N.D.
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) EX31_RS22835 N.D.
Non functional Dihydropteroate synthase 2 No genes
Nucleoside triphosphate pyrophosphohydrolase MazG No genes
Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) EX31_RS04635 +0.1
  EX31_RS13390 +0.1
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) EX31_RS24725 -0.2
PqqC-like protein No genes
Putative DHNTP pyrophosphatase No genes
Related to Dihydropteroate synthase No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) EX31_RS20585 N.D.
Substrate-specific component FolT of folate ECF transporter No genes
Thymidine kinase (EC 2.7.1.21) EX31_RS10080 +0.0
Thymidylate synthase (EC 2.1.1.45) EX31_RS13190 N.D.
Thymidylate synthase thyX (EC 2.1.1.-) No genes
Transaldolase (EC 2.2.1.2) EX31_RS03920 -3.0
  EX31_RS09820 -0.3
  EX31_RS14655 +0.2
  EX31_RS20280 -0.0
Transmembrane component of general energizing module of ECF transporters No genes
Xanthosine/inosine triphosphate pyrophosphatase No genes
alternate gene name: yzbB No genes

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