SEED Subsystem: Glycine and Serine Utilization in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Gly-Glu (C)  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) BPHYT_RS34655 -0.2
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) BPHYT_RS19320 -2.4
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) BPHYT_RS01425 -0.3
  BPHYT_RS02135 -1.6
  BPHYT_RS07305 N.D.
  BPHYT_RS20865 +0.4
  BPHYT_RS20960 +0.0
  BPHYT_RS24525 -0.6
  BPHYT_RS27900 N.D.
  BPHYT_RS30215 N.D.
  BPHYT_RS30460 -0.0
  BPHYT_RS31465 +0.0
  BPHYT_RS31685 -0.2
  BPHYT_RS31960 +0.3
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator BPHYT_RS11810 -0.2
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter No genes
Glycerate kinase (EC 2.7.1.31) BPHYT_RS09440 -0.2
Glycine cleavage system H protein BPHYT_RS19325 -1.6
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) BPHYT_RS19330 -1.9
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) No genes
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) BPHYT_RS19340 -1.3
  BPHYT_RS25100 +0.3
L-serine dehydratase, beta subunit (EC 4.3.1.17) BPHYT_RS19340 -1.3
  BPHYT_RS25100 +0.3
Monoamine oxidase (1.4.3.4) BPHYT_RS09910 +0.2
Phosphoserine aminotransferase (EC 2.6.1.52) BPHYT_RS14915 -0.2
Phosphoserine phosphatase (EC 3.1.3.3) BPHYT_RS02470 +0.0
  BPHYT_RS03625 -0.8
  BPHYT_RS09200 N.D.
Serine hydroxymethyltransferase (EC 2.1.2.1) BPHYT_RS01260 -0.3
  BPHYT_RS03725 -2.1
  BPHYT_RS25180 -0.5
Serine transporter No genes
Seryl-tRNA synthetase (EC 6.1.1.11) BPHYT_RS05105 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) BPHYT_RS15425 +0.0

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