SEED Subsystem: DNA-replication in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name Cisplatin 0.003 mg/ml  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) HSERO_RS06165 -5.6
ATP-dependent DNA helicase RecQ HSERO_RS02465 -3.2
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA HSERO_RS00005 N.D.
  HSERO_RS03155 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) HSERO_RS02080 N.D.
DNA polymerase I (EC 2.7.7.7) HSERO_RS02260 -4.0
DNA polymerase II (EC 2.7.7.7) HSERO_RS12200 -0.9
DNA polymerase III alpha subunit (EC 2.7.7.7) HSERO_RS17825 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) HSERO_RS00010 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) HSERO_RS07285 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) HSERO_RS13015 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) HSERO_RS02970 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) HSERO_RS11365 +0.3
  HSERO_RS17105 -5.0
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) HSERO_RS18370 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) HSERO_RS04360 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN HSERO_RS03060 -2.2
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication HSERO_RS01525 -0.1
  HSERO_RS21775 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA HSERO_RS02090 -3.8
Holliday junction DNA helicase RuvB HSERO_RS02095 -0.9
Primosomal protein I No genes
Primosomal replication protein N HSERO_RS10375 N.D.
Primosomal replication protein N prime prime No genes
RecA protein HSERO_RS03270 -2.6
Recombination protein RecR HSERO_RS18355 -5.5
Replicative DNA helicase (EC 3.6.1.-) HSERO_RS10390 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HSERO_RS13965 -3.7
Transcription-repair coupling factor HSERO_RS15180 -3.4

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