SEED Subsystem: Oxidative stress in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name propionate (C)  
⨯
Alkyl hydroperoxide reductase subunit C-like protein RR42_RS15405 -0.4
  RR42_RS32715 -0.1
Catalase (EC 1.11.1.6) RR42_RS16550 -0.1
  RR42_RS17380 +0.0
  RR42_RS26270 -0.1
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR RR42_RS17560 -0.1
  RR42_RS37270 +0.1
Ferroxidase (EC 1.16.3.1) RR42_RS17370 N.D.
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator RR42_RS17385 -0.1
  RR42_RS19770 +0.0
  RR42_RS23165 -0.0
  RR42_RS27970 -0.2
Iron-binding ferritin-like antioxidant protein RR42_RS17370 N.D.
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR RR42_RS08875 +0.2
  RR42_RS09180 +0.1
NnrS protein involved in response to NO RR42_RS09195 +0.1
Non-specific DNA-binding protein Dps RR42_RS17370 N.D.
Organic hydroperoxide resistance protein RR42_RS22590 -1.2
Organic hydroperoxide resistance transcriptional regulator RR42_RS22585 +0.4
Paraquat-inducible protein A RR42_RS03890 -0.1
  RR42_RS03895 -0.2
Paraquat-inducible protein B RR42_RS03885 -0.1
Peroxidase (EC 1.11.1.7) RR42_RS16550 -0.1
  RR42_RS26270 -0.1
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) RR42_RS15955 +0.2
Superoxide dismutase [Fe] (EC 1.15.1.1) RR42_RS03480 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) RR42_RS25690 +0.2
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR RR42_RS01045 +0.0
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family RR42_RS01620 -0.2
  RR42_RS04050 -0.1
  RR42_RS12875 -0.2
  RR42_RS25385 -0.1
  RR42_RS25550 +0.2
  RR42_RS27910 +1.3
  RR42_RS28775 -0.1
  RR42_RS29000 +0.3
  RR42_RS35040 +0.3
transcriptional regulator, Fur family No genes

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