SEED Subsystem: Heat shock dnaK gene cluster extended in Sinorhizobium meliloti 1021

Experiments:

Role Gene Name Fusidic 0.0001 mg/ml  
⨯
Chaperone protein DnaJ SMc02858 +0.9
Chaperone protein DnaK SMc02857 N.D.
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX No genes
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) SMc00419 +0.8
Heat shock protein GrpE SMc01142 N.D.
Heat-inducible transcription repressor HrcA SMc01143 -0.4
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) SMc01146 -1.1
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH SMc00646 N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB SMc01147 -2.6
Ribonuclease PH (EC 2.7.7.56) SMc01144 -1.9
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) SMc00826 +1.4
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) SMc01472 -1.2
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) SMc03876 -0.4
Signal peptidase-like protein No genes
Translation elongation factor LepA SMc00349 -0.6
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I SMc00416 -0.7
tmRNA-binding protein SmpB SMc02405 N.D.

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