SEED Subsystem: Photorespiration (oxidative C2 cycle) in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name Glycerol (C)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) HSERO_RS10090 +0.1
2-oxoglutarate/malate translocator HSERO_RS04820 -0.0
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) No genes
Catalase (EC 1.11.1.6) HSERO_RS02745 -0.3
  HSERO_RS06245 -2.5
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) HSERO_RS19115 +0.0
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) HSERO_RS10055 -0.0
Glycine cleavage system H protein HSERO_RS07915 +0.4
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE HSERO_RS19100 -1.6
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF HSERO_RS19095 -1.2
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD HSERO_RS19105 -0.9
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) No genes
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) HSERO_RS15200 N.D.
Malate synthase G (EC 2.3.3.9) No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) HSERO_RS19430 -0.2
  HSERO_RS21485 -0.5
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) HSERO_RS06140 N.D.
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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