SEED Subsystem: DNA repair, bacterial in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Lomefloxacin 0.001 mM  
⨯
A/G-specific adenine glycosylase (EC 3.2.2.-) BPHYT_RS02875 +0.1
ADA regulatory protein BPHYT_RS19690 +0.6
Alkylated DNA repair protein AlkB BPHYT_RS23865 +0.0
DNA mismatch repair endonuclease MutH No genes
DNA polymerase IV (EC 2.7.7.7) BPHYT_RS01275 +0.5
  BPHYT_RS29110 -0.2
DNA polymerase-like protein MT3142 No genes
DNA polymerase-like protein PA0670 BPHYT_RS00955 +0.7
  BPHYT_RS06845 -0.0
DNA recombination protein RmuC BPHYT_RS14515 -0.9
DNA recombination-dependent growth factor C BPHYT_RS06215 +0.1
DNA repair exonuclease family protein YhaO No genes
DNA repair protein RadA BPHYT_RS12235 -2.2
DNA repair protein RadC BPHYT_RS15625 +0.3
DNA repair protein RecN BPHYT_RS03560 -2.2
DNA-damage-inducible protein I No genes
DNA-damage-inducible protein J No genes
Endonuclease IV (EC 3.1.21.2) No genes
Endonuclease V (EC 3.1.21.7) No genes
Exodeoxyribonuclease III (EC 3.1.11.2) BPHYT_RS01570 +0.1
  BPHYT_RS12925 -0.2
  BPHYT_RS29690 -0.2
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) BPHYT_RS15865 -1.5
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) BPHYT_RS33585 -0.0
Exonuclease SbcC No genes
Exonuclease SbcD No genes
G:T/U mismatch-specific uracil/thymine DNA-glycosylase BPHYT_RS06010 +0.2
  BPHYT_RS10515 N.D.
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) BPHYT_RS05855 +0.1
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) BPHYT_RS15955 -0.2
  BPHYT_RS19690 +0.6
  BPHYT_RS20550 N.D.
RecA protein BPHYT_RS16360 N.D.
Recombinational DNA repair protein RecT (prophage associated) No genes
SOS-response repressor and protease LexA (EC 3.4.21.88) BPHYT_RS08785 N.D.
  BPHYT_RS35975 +0.1
Single-stranded DNA-binding protein BPHYT_RS02980 N.D.
  BPHYT_RS19790 -0.1
Very-short-patch mismatch repair endonuclease (G-T specific) BPHYT_RS05605 N.D.

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