SEED Subsystem: DNA-replication in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Lomefloxacin 0.001 mM  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) BPHYT_RS03400 -1.2
ATP-dependent DNA helicase RecQ BPHYT_RS18145 -0.0
  BPHYT_RS31360 -0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA BPHYT_RS00005 N.D.
  BPHYT_RS03630 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) BPHYT_RS16605 N.D.
DNA polymerase I (EC 2.7.7.7) BPHYT_RS33610 -1.4
DNA polymerase II (EC 2.7.7.7) BPHYT_RS23105 +0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) BPHYT_RS00950 -0.2
  BPHYT_RS06170 N.D.
  BPHYT_RS06850 +0.0
DNA polymerase III beta subunit (EC 2.7.7.7) BPHYT_RS00010 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) BPHYT_RS04800 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) BPHYT_RS09630 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) BPHYT_RS16775 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) BPHYT_RS14225 N.D.
  BPHYT_RS15265 -0.1
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) BPHYT_RS09055 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) BPHYT_RS33545 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) BPHYT_RS00825 -0.1
  BPHYT_RS32140 -0.0
DNA repair protein RecN BPHYT_RS03560 -2.2
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) BPHYT_RS07980 N.D.
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) BPHYT_RS07975 N.D.
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) BPHYT_RS07970 N.D.
Helicase PriA essential for oriC/DnaA-independent DNA replication BPHYT_RS19360 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA BPHYT_RS16615 N.D.
Holliday junction DNA helicase RuvB BPHYT_RS16620 N.D.
Primosomal protein I No genes
Primosomal replication protein N BPHYT_RS08860 N.D.
Primosomal replication protein N prime prime No genes
RecA protein BPHYT_RS16360 N.D.
Recombination protein RecR BPHYT_RS09070 -0.9
Replicative DNA helicase (EC 3.6.1.-) BPHYT_RS08875 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) BPHYT_RS12730 -0.6
Transcription-repair coupling factor BPHYT_RS09290 +1.0

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