SEED Subsystem: Alginate metabolism in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Lomefloxacin 0.001 mM  
⨯
Alginate biosynthesis protein Alg8 No genes
Alginate biosynthesis protein AlgX No genes
Alginate biosynthesis transcriptional activator No genes
Alginate lyase (EC 4.2.2.3) No genes
Alginate lyase precursor (EC 4.2.2.3) No genes
GDP-mannose 6-dehydrogenase (EC 1.1.1.132) No genes
Hexuronate transporter BPHYT_RS23445 +0.1
  BPHYT_RS24120 +0.0
  BPHYT_RS31135 -0.0
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) BPHYT_RS08530 N.D.
  BPHYT_RS31080 N.D.
Mannose-6-phosphate isomerase (EC 5.3.1.8) BPHYT_RS04415 -0.2
  BPHYT_RS11350 N.D.
  BPHYT_RS13015 N.D.
  BPHYT_RS29610 +0.1
  BPHYT_RS34175 +1.2
  BPHYT_RS34950 N.D.
Pectin degradation protein KdgF No genes
Phosphomannomutase (EC 5.4.2.8) BPHYT_RS04470 N.D.
Poly(beta-D-mannuronate) C5 epimerase precursor (EC 5.1.3.-) No genes
Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) No genes
RNA polymerase sigma-H factor AlgT No genes
alginate biosynthesis protein AlgJ No genes
alginate o-acetyltransferase AlgF No genes
outer membrane protein AlgE No genes
poly(beta-D-mannuronate) lyase (EC 4.2.2.3) No genes

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