SEED Subsystem: DNA-replication in Rhodospirillum rubrum S1H

Experiments:

Role Gene Name carbon source anaerobic Succinic Acid 31.25 mM  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) Rru_A1728 N.D.
ATP-dependent DNA helicase RecQ Rru_A0089 -0.0
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA Rru_A0001 N.D.
  Rru_A2163 -1.5
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Rru_A1087 N.D.
DNA polymerase I (EC 2.7.7.7) Rru_A3514 N.D.
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) Rru_A1582 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) Rru_A0002 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) Rru_A2200 -2.9
DNA polymerase III delta prime subunit (EC 2.7.7.7) Rru_A1702 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) Rru_A3629 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) Rru_A3611 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) Rru_A3473 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) Rru_A2883 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN Rru_A0940 N.D.
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication Rru_A1222 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA Rru_A1088 N.D.
Holliday junction DNA helicase RuvB Rru_A1089 N.D.
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein Rru_A2819 N.D.
Recombination protein RecR Rru_A3471 N.D.
Replicative DNA helicase (EC 3.6.1.-) Rru_A0410 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Rru_A2408 N.D.
Transcription-repair coupling factor Rru_A1726 -1.5

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