SEED Subsystem: D-ribose utilization in Rhodospirillum rubrum S1H

Experiments:

Role Gene Name carbon source anaerobic Succinic Acid 31.25 mM  
⨯
Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Predicted regulator of ribose utilization, LacI family No genes
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) No genes
Ribokinase (EC 2.7.1.15) Rru_A2297 +1.9
Ribose 5-phosphate isomerase A (EC 5.3.1.6) No genes
Ribose 5-phosphate isomerase B (EC 5.3.1.6) Rru_A1334 +0.4
  Rru_A1359 -0.4
  Rru_A1828 N.D.
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) Rru_A1337 -0.2
  Rru_A2301 +0.9
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) No genes
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) Rru_A1336 -1.2
  Rru_A1365 N.D.
  Rru_A2302 +1.4
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) Rru_A1335 -0.5
  Rru_A1338 -0.8
  Rru_A1363 -1.3
  Rru_A2299 +0.7
  Rru_A2300 +1.6
Ribose operon repressor No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17) No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1 No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2 No genes

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