SEED Subsystem: DNA-replication in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name Cisplatin 0.006 mg/ml  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) Pf1N1B4_2105 -2.2
ATP-dependent DNA helicase RecQ Pf1N1B4_3533 -0.2
  Pf1N1B4_6014 +0.2
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA Pf1N1B4_1929 N.D.
  Pf1N1B4_3701 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Pf1N1B4_639 N.D.
DNA polymerase I (EC 2.7.7.7) Pf1N1B4_1875 N.D.
DNA polymerase II (EC 2.7.7.7) Pf1N1B4_87 -0.2
DNA polymerase III alpha subunit (EC 2.7.7.7) Pf1N1B4_2733 +0.5
  Pf1N1B4_3099 N.D.
  Pf1N1B4_5679 +0.4
DNA polymerase III beta subunit (EC 2.7.7.7) Pf1N1B4_1928 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) Pf1N1B4_899 -0.1
DNA polymerase III delta prime subunit (EC 2.7.7.7) Pf1N1B4_422 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) Pf1N1B4_2703 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) Pf1N1B4_2475 N.D.
  Pf1N1B4_4599 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) Pf1N1B4_3862 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) Pf1N1B4_2514 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN Pf1N1B4_1178 -0.9
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) Pf1N1B4_1234 -1.9
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) Pf1N1B4_1235 -0.8
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) Pf1N1B4_1236 -0.9
Helicase PriA essential for oriC/DnaA-independent DNA replication Pf1N1B4_1548 N.D.
  Pf1N1B4_1549 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA Pf1N1B4_638 N.D.
Holliday junction DNA helicase RuvB Pf1N1B4_637 N.D.
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein Pf1N1B4_3143 -1.8
  Pf1N1B4_5514 +0.2
Recombination protein RecR Pf1N1B4_3864 -2.7
Replicative DNA helicase (EC 3.6.1.-) Pf1N1B4_1397 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Pf1N1B4_3020 +0.5
Transcription-repair coupling factor Pf1N1B4_3916 -2.3

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