SEED Subsystem: Ribosome biogenesis bacterial in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name D-Alanine (C)  
⨯
16S rRNA processing protein RimM Pf6N2E2_3148 N.D.
Dimethyladenosine transferase (EC 2.1.1.-) No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
LSU m3Psi1915 methyltransferase RlmH Pf6N2E2_4996 +0.3
LSU m5C1962 methyltransferase RlmI Pf6N2E2_4566 -0.3
RNA pseudouridylate synthase, group 1 No genes
Ribonuclease E (EC 3.1.26.12) Pf6N2E2_5942 N.D.
Ribonuclease M5 (EC 3.1.26.8) No genes
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) Pf6N2E2_5794 +0.4
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) Pf6N2E2_5944 +0.9
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) Pf6N2E2_5127 N.D.
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Pf6N2E2_3514 +0.1
Ribosomal protein S6 glutaminyl transferase Pf6N2E2_3902 +1.4
  Pf6N2E2_3903 +1.3
  Pf6N2E2_4735 +0.1
Ribosomal-protein-L7p-serine acetyltransferase No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Pf6N2E2_5188 +0.9
Ribosomal-protein-S5p-alanine acetyltransferase No genes
Similar to ribosomal large subunit pseudouridine synthase A Pf6N2E2_2426 +0.0
Similar to ribosomal large subunit pseudouridine synthase A, group 2 No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type No genes
Similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type No genes
Similar to ribosomal large subunit pseudouridine synthase D, TTE1780-type No genes
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase No genes
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) Pf6N2E2_3147 N.D.

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