SEED Subsystem: DNA repair, bacterial in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Cisplatin 0.006 mg/ml  
⨯
A/G-specific adenine glycosylase (EC 3.2.2.-) AO353_12050 -0.2
  AO353_12055 -0.1
ADA regulatory protein AO353_27015 -1.0
Alkylated DNA repair protein AlkB AO353_27010 +0.1
DNA mismatch repair endonuclease MutH No genes
DNA polymerase IV (EC 2.7.7.7) AO353_16910 -0.6
DNA polymerase-like protein MT3142 No genes
DNA polymerase-like protein PA0670 AO353_22710 -0.6
DNA recombination protein RmuC AO353_02560 -1.5
DNA recombination-dependent growth factor C AO353_02515 -2.5
DNA repair exonuclease family protein YhaO No genes
DNA repair protein RadA AO353_13980 -3.3
DNA repair protein RadC AO353_09220 -0.4
DNA repair protein RecN AO353_05660 -2.3
DNA-damage-inducible protein I No genes
DNA-damage-inducible protein J AO353_29090 N.D.
Endonuclease IV (EC 3.1.21.2) No genes
Endonuclease V (EC 3.1.21.7) No genes
Exodeoxyribonuclease III (EC 3.1.11.2) AO353_09250 +0.1
  AO353_27875 -0.7
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) AO353_15935 +0.1
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) AO353_06645 N.D.
Exonuclease SbcC AO353_23675 -0.3
  AO353_28050 +0.1
Exonuclease SbcD AO353_23680 -0.6
G:T/U mismatch-specific uracil/thymine DNA-glycosylase AO353_28115 -0.4
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) No genes
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) AO353_15075 -0.6
  AO353_27015 -1.0
RecA protein AO353_16805 -1.1
Recombinational DNA repair protein RecT (prophage associated) No genes
SOS-response repressor and protease LexA (EC 3.4.21.88) AO353_00465 N.D.
  AO353_22700 +0.7
Single-stranded DNA-binding protein AO353_06845 N.D.
Very-short-patch mismatch repair endonuclease (G-T specific) No genes

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