SEED Subsystem: Nitrate and nitrite ammonification in Dechlorosoma suillum PS

Experiments:

Role Gene Name Anaerobic growth in rich media with nitrate electron acceptor  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Dsui_1817 -1.1
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC Dsui_0144 -0.2
  Dsui_1176 -4.7
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) Dsui_1178 N.D.
Ferredoxin-type protein NapG (periplasmic nitrate reductase) Dsui_0509 -2.8
  Dsui_3304 -1.7
Nitrate ABC transporter, ATP-binding protein Dsui_1833 -0.0
  Dsui_2121 N.D.
Nitrate ABC transporter, nitrate-binding protein Dsui_1831 +0.4
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Dsui_0511 N.D.
Nitrate/nitrite response regulator protein No genes
Nitrate/nitrite sensor protein (EC 2.7.3.-) No genes
Nitrate/nitrite transporter No genes
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Dsui_1825 -0.5
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Dsui_1826 N.D.
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Dsui_0508 -3.0
Polyferredoxin NapH (periplasmic nitrate reductase) Dsui_0510 -1.9
  Dsui_3303 -1.9
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) Dsui_0149 +0.0
Respiratory nitrate reductase beta chain (EC 1.7.99.4) Dsui_0148 -0.0
  Dsui_3011 N.D.
Respiratory nitrate reductase delta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Dsui_1828 -0.3

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