SEED Subsystem: Polyamine Metabolism in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name butyrate (C)  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) No genes
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Psest_3657 -0.4
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) Psest_4291 +0.2
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) Psest_3350 -1.0
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD Psest_0230 +0.1
  Psest_0273 +0.0
  Psest_2808 N.D.
Biosynthetic arginine decarboxylase (EC 4.1.1.19) Psest_3366 -0.0
Carbamate kinase (EC 2.7.2.2) Psest_0270 +0.6
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter Psest_3659 +0.3
N-carbamoylputrescine amidase (3.5.1.53) Psest_4290 -0.5
Ornithine decarboxylase (EC 4.1.1.17) Psest_3350 -1.0
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion No genes
Predicted polyamine sensor NspS, involved in biofilm formation Psest_3900 +1.3
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter Psest_3660 +0.1
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) Psest_4283 -0.6
  Psest_4284 -0.2
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Psest_3658 -0.0
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) Psest_4282 -0.0
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) Psest_4281 -0.1
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) Psest_4280 -0.2
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Psest_3656 -0.5
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Psest_3655 +0.4
Spermidine synthase (EC 2.5.1.16) Psest_1802 +0.4
  Psest_1911 -0.3
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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