SEED Subsystem: Nitrate and nitrite ammonification in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name nitrite (N)  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Psest_1926 -3.2
  Psest_3905 -0.4
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC Psest_3043 +0.7
  Psest_0816 N.D.
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein Psest_0148 +0.3
Nitrate ABC transporter, nitrate-binding protein Psest_0150 -0.1
  Psest_1937 -0.4
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Psest_3042 -0.5
Nitrate/nitrite response regulator protein Psest_3491 N.D.
Nitrate/nitrite sensor protein (EC 2.7.3.-) Psest_2047 -0.1
  Psest_3490 -0.2
Nitrate/nitrite transporter Psest_1932 -0.0
  Psest_3487 -0.3
  Psest_3489 -0.0
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Psest_1928 -2.9
  Psest_2406 -0.1
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Psest_1927 N.D.
  Psest_2407 +0.1
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family Psest_2408 +0.3
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD Psest_3040 +0.1
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Psest_3041 +0.1
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) Psest_3486 +0.1
Respiratory nitrate reductase beta chain (EC 1.7.99.4) Psest_3485 +0.1
Respiratory nitrate reductase delta chain (EC 1.7.99.4) Psest_3484 +0.6
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) Psest_3483 +0.2
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Psest_0151 -0.0
  Psest_1936 -1.8

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