SEED Subsystem: Heat shock dnaK gene cluster extended in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days  
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Chaperone protein DnaJ BPHYT_RS03595 N.D.
  BPHYT_RS22140 N.D.
Chaperone protein DnaK BPHYT_RS03590 N.D.
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX BPHYT_RS12990 -0.2
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) BPHYT_RS02560 -0.3
Heat shock protein GrpE BPHYT_RS03585 N.D.
Heat-inducible transcription repressor HrcA BPHYT_RS03570 -0.3
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) BPHYT_RS15330 -0.0
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH BPHYT_RS02775 N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB BPHYT_RS15335 -0.1
Ribonuclease PH (EC 2.7.7.56) BPHYT_RS15325 -0.5
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) BPHYT_RS16855 +2.0
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) BPHYT_RS17020 -0.5
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) BPHYT_RS03580 -0.4
Signal peptidase-like protein No genes
Translation elongation factor LepA BPHYT_RS14380 -0.8
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I BPHYT_RS01940 -1.0
tmRNA-binding protein SmpB BPHYT_RS12040 N.D.

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