SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name Inosine (C)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) PFLU_RS08860 -1.5
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PFLU_RS24010 +0.1
  PFLU_RS28915 -0.9
Catalase (EC 1.11.1.6) PFLU_RS00355 +0.0
  PFLU_RS09945 -0.4
  PFLU_RS19005 -0.2
  PFLU_RS26240 +0.2
  PFLU_RS27035 +0.1
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) PFLU_RS15570 +0.5
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) PFLU_RS14645 +0.3
  PFLU_RS24110 N.D.
Glycine cleavage system H protein PFLU_RS23995 +0.3
  PFLU_RS28910 +0.5
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PFLU_RS24000 -0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE No genes
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF No genes
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD No genes
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) PFLU_RS08870 -2.8
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) PFLU_RS27685 -0.7
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) PFLU_RS00230 +0.2
  PFLU_RS20800 -0.1
  PFLU_RS27385 +0.3
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) PFLU_RS26190 -0.1
  PFLU_RS26195 N.D.
  PFLU_RS27825 -0.2
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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