SEED Subsystem: Glycine and Serine Utilization in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Ying_Others16 rep A; time point 2  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Pf6N2E2_2800 +0.2
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Pf6N2E2_4485 -0.2
  Pf6N2E2_5556 +0.5
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) Pf6N2E2_5896 -0.1
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Pf6N2E2_1079 -0.1
  Pf6N2E2_2725 -0.4
  Pf6N2E2_3246 N.D.
  Pf6N2E2_372 +0.0
  Pf6N2E2_3932 -2.6
  Pf6N2E2_562 +0.1
  Pf6N2E2_6020 -0.1
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter Pf6N2E2_5459 -0.3
Glycerate kinase (EC 2.7.1.31) Pf6N2E2_460 +0.0
  Pf6N2E2_5532 N.D.
Glycine cleavage system H protein Pf6N2E2_4486 -0.5
  Pf6N2E2_5559 -0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Pf6N2E2_5558 -0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) Pf6N2E2_4685 -0.4
  Pf6N2E2_5557 +0.2
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) Pf6N2E2_2521 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) Pf6N2E2_1589 +0.3
  Pf6N2E2_3630 -1.6
  Pf6N2E2_3940 -2.7
  Pf6N2E2_4563 +0.0
  Pf6N2E2_5785 +0.3
Serine hydroxymethyltransferase (EC 2.1.2.1) Pf6N2E2_4717 -1.7
  Pf6N2E2_5082 N.D.
  Pf6N2E2_5083 +0.2
  Pf6N2E2_5295 -0.4
Serine transporter Pf6N2E2_563 +0.1
Seryl-tRNA synthetase (EC 6.1.1.11) Pf6N2E2_301 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) No genes

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