SEED Subsystem: DNA Repair Base Excision in Klebsiella michiganensis M5al

Experiments:

Role Gene Name Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) BWI76_RS20625 N.D.
DNA polymerase I (EC 2.7.7.7) BWI76_RS00355 +0.6
  BWI76_RS22910 +0.1
DNA polymerase II (EC 2.7.7.7) BWI76_RS04575 +0.1
DNA-3-methyladenine glycosylase (EC 3.2.2.20) BWI76_RS26920 -0.1
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) BWI76_RS19130 -0.3
Endonuclease III (EC 4.2.99.18) BWI76_RS16385 N.D.
Endonuclease VIII BWI76_RS08380 -0.1
Exodeoxyribonuclease I (EC 3.1.11.1) BWI76_RS18785 -0.3
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) BWI76_RS27330 +0.2
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) BWI76_RS23805 -1.5
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 BWI76_RS21380 +0.0

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