| Role | Gene | Name | Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days | |
|---|
| | | ⨯ | |
| 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) | BPHYT_RS22635 | | +0.4 | |
| 4-hydroxyproline epimerase (EC 5.1.1.8) | BPHYT_RS22640 | | +0.1 | |
| Aldehyde dehydrogenase (EC 1.2.1.3) in 4-hydroxyproline catabolic gene cluster | No genes | | | |
| Amino acid permease in 4-hydroxyproline catabolic gene cluster | No genes | | | |
| D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster | No genes | | | |
| D-amino-acid oxidase (EC 1.4.3.3) | BPHYT_RS22645 | | +0.0 | |
| D-proline reductase, 23 kDa subunit (EC 1.21.4.1) | No genes | | | |
| D-proline reductase, 26 kDa subunit (EC 1.21.4.1) | No genes | | | |
| D-proline reductase, 45 kDa subunit (EC 1.21.4.1) | No genes | | | |
| Delta 1-pyrroline-5-carboxylate dehydrogenase domain protein | No genes | | | |
| Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | BPHYT_RS06150 | | +0.6 | |
| | BPHYT_RS19355 | | +1.3 | |
| Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster | No genes | | | |
| Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain | No genes | | | |
| Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) | BPHYT_RS24140 | | +0.2 | |
| | BPHYT_RS28455 | | +0.0 | |
| L-Proline/Glycine betaine transporter ProP | BPHYT_RS10805 | | +0.6 | |
| | BPHYT_RS12995 | | N.D. | |
| | BPHYT_RS20435 | | +0.2 | |
| | BPHYT_RS22625 | | +0.2 | |
| | BPHYT_RS25640 | | -0.2 | |
| | BPHYT_RS28490 | | -0.4 | |
| | BPHYT_RS28670 | | +0.4 | |
| | BPHYT_RS28710 | | +0.6 | |
| | BPHYT_RS28755 | | N.D. | |
| | BPHYT_RS28835 | | -0.6 | |
| | BPHYT_RS31705 | | -0.2 | |
| Microbial collagenase, secreted (EC 3.4.24.3) | No genes | | | |
| Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues] | BPHYT_RS28265 | | -0.1 | |
| Predicted 4-hydroxyproline dipeptidase | No genes | | | |
| Predicted regulator PutR for proline utilization, GntR family | BPHYT_RS11040 | | -0.8 | |
| | BPHYT_RS15065 | | +0.4 | |
| | BPHYT_RS23045 | | N.D. | |
| | BPHYT_RS23770 | | -0.9 | |
| | BPHYT_RS23940 | | +0.6 | |
| | BPHYT_RS30810 | | -0.4 | |
| | BPHYT_RS34445 | | +0.1 | |
| ProQ: influences osmotic activation of compatible solute ProP | No genes | | | |
| Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) | BPHYT_RS19355 | | +1.3 | |
| Proline iminopeptidase (EC 3.4.11.5) | No genes | | | |
| Proline racemase (EC 5.1.1.4) | No genes | | | |
| Proline-specific permease proY | No genes | | | |
| Proline/sodium symporter PutP (TC 2.A.21.2.1) | No genes | | | |
| PutR, transcriptional activator of PutA and PutP | No genes | | | |
| Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster | No genes | | | |
| Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster | BPHYT_RS22650 | | +0.3 | |
| Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) | BPHYT_RS26875 | | -0.1 | |
| Transcriptional repressor of PutA and PutP | BPHYT_RS19355 | | +1.3 | |
| Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) | No genes | | | |
| putPA fragment of control region | No genes | | | |