SEED Subsystem: Nitrate and nitrite ammonification in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name nitrogen source nitrate 20mM  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Pf6N2E2_2380 -1.8
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC Pf6N2E2_1599 -0.1
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein Pf6N2E2_2374 -2.0
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Pf6N2E2_1598 +0.1
Nitrate/nitrite response regulator protein Pf6N2E2_725 -0.4
Nitrate/nitrite sensor protein (EC 2.7.3.-) Pf6N2E2_726 +0.2
Nitrate/nitrite transporter Pf6N2E2_1014 -0.8
  Pf6N2E2_1042 +0.3
  Pf6N2E2_1105 +0.2
  Pf6N2E2_1664 +0.1
  Pf6N2E2_2376 -1.7
  Pf6N2E2_610 +0.2
  Pf6N2E2_727 +0.0
  Pf6N2E2_728 -0.9
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Pf6N2E2_1114 -1.0
  Pf6N2E2_2378 -2.0
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Pf6N2E2_1115 -1.3
  Pf6N2E2_2379 N.D.
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD Pf6N2E2_1596 -0.0
Periplasmic nitrate reductase component NapE Pf6N2E2_1595 N.D.
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Pf6N2E2_1597 -0.0
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) Pf6N2E2_729 +0.1
Respiratory nitrate reductase beta chain (EC 1.7.99.4) Pf6N2E2_730 +0.0
Respiratory nitrate reductase delta chain (EC 1.7.99.4) Pf6N2E2_731 -0.7
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) Pf6N2E2_732 +0.2
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Pf6N2E2_2375 -2.9

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